recipe transit

TRANSIT

Homepage

http://github.com/mad-lab/transit

Developer docs

https://github.com/simongog/sdsl-lite

License

GPL / GPL-3

Recipe

/transit/meta.yaml

TRANSIT is a software that can be used to analyze Tn-Seq datasets. It includes various statistical calculations of essentiality of genes or genomic regions (including conditional essentiality between 2 conditions).

package transit

(downloads) docker_transit

Versions

3.1.0-03.0.2-13.0.2-03.0.1-02.5.2-02.3.3-12.3.3-02.3.2-02.3.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install transit

and update with:

conda update transit

or use the docker container:

docker pull quay.io/biocontainers/transit:<tag>

(see transit/tags for valid values for <tag>)