recipe treeswirl

TreeSwirl: A tool to infer locus-specific population mixtures from linked genome-wide allele frequencies.

Homepage:

https://bitbucket.org/wegmannlab/treeswirl

Documentation:

https://bitbucket.org/wegmannlab/treeswirl/wiki/Home

License:

MPL-2.0

Recipe:

/treeswirl/meta.yaml

Links:

doi: 10.1093/molbev/msae137

package treeswirl

versions:

2.0.0-0

depends _openmp_mutex:

>=4.5

depends armadillo:

>=14.4,<15.0a0

depends fmt:

>=10.2.1,<11.0a0

depends lapack:

depends libgcc:

>=13

depends libgomp:

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends mkl:

depends openblas:

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install treeswirl

and update with::

   mamba update treeswirl

To create a new environment, run:

mamba create --name myenvname treeswirl

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/treeswirl:<tag>

(see `treeswirl/tags`_ for valid values for ``<tag>``)

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