recipe treetime

Maximum-Likelihood dating and ancestral inference for phylogenetic trees

Homepage

https://github.com/neherlab/treetime

License

MIT / MIT

Recipe

/treetime/meta.yaml

package treetime

Versions

0.8.1-0,  0.7.5-0,  0.7.4-1,  0.7.4-0,  0.7.3-0,  0.7.2-0,  0.7.0-0,  0.6.4.1-0,  0.6.3-0, 

0.8.1-0,  0.7.5-0,  0.7.4-1,  0.7.4-0,  0.7.3-0,  0.7.2-0,  0.7.0-0,  0.6.4.1-0,  0.6.3-0,  0.6.1-0,  0.5.6-0,  0.5.5-0,  0.5.3-0,  0.5.2-1,  0.5.2-0,  0.5.1-0,  0.5.0-0,  0.4.1-0,  0.4.0-0,  0.2.4-1,  0.2.4-0,  0.2.1-1,  0.2.1-0,  0.1-1

Depends

• biopython >=1.66

• matplotlib-base

• numpy >=1.10.4

• pandas >=0.17.1

• python

• scipy >=0.16.1

Required By

• augur

• panx

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install treetime

and update with:

conda update treetime

or use the docker container:

docker pull quay.io/biocontainers/treetime:<tag>

(see treetime/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/treetime/README.html)