recipe tribal

TRIBAL is a package to infer B cell lineage trees from single-cell RNA sequencing data.

Homepage:

https://github.com/elkebir-group/TRIBAL

Documentation:

https://elkebir-group.github.io/TRIBAL

License:

BSD-3-Clause

Recipe:

/tribal/meta.yaml

package tribal

versions:

0.1.1-1,  0.1.1-0

depends biopython:

>=1.81

depends ete3:

>=3.1.2

depends glpk:

>=5.0

depends libgcc:

>=12

depends libstdcxx:

>=12

depends mafft:

7.526

depends networkx:

>=3.1

depends numpy:

>=1.26,<2.0

depends pandas:

depends pygraphviz:

>=1.10

depends pyomo:

>=6.7

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tribal

and update with::

   mamba update tribal

To create a new environment, run:

mamba create --name myenvname tribal

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tribal:<tag>

(see `tribal/tags`_ for valid values for ``<tag>``)

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