recipe trnanalysis

tRNA analysis pipeline

Homepage:

https://trnanalysis.readthedocs.io/en/latest/

License:

MIT

Recipe:

/trnanalysis/meta.yaml

package trnanalysis

Versions:

0.1.10-1,  0.1.10-0,  0.1.9-0,  0.1.8-1,  0.1.8-0,  0.1.7-2,  0.1.7-1,  0.1.7-0,  0.1.6-1, 

0.1.10-1,  0.1.10-0,  0.1.9-0,  0.1.8-1,  0.1.8-0,  0.1.7-2,  0.1.7-1,  0.1.7-0,  0.1.6-1,  0.1.6-0,  0.1.5-0,  0.1.4-0,  0.1.2-0,  0.1.0-0

Depends:

• bcftools

• bioconductor-deseq2

• bioconductor-org.hs.eg.db

• bowtie

• cgat-apps

• cgatcore >=0.6.5

• configparser

• ez_setup

• fastq-screen

• fastqc

• multiqc

• mysqlclient

• numpy >=1.16.4

• pandas

• pysam 0.15.2.*

• python >=3

• pyyaml >=5.1

• r-base

• r-codetools

• r-dplyr

• r-dt

• r-fastqcr

• r-ggplot2

• r-ggpubr

• r-ggrepel

• r-ggthemes

• r-gridbase

• r-htmltools

• r-knitr

• r-optparse

• r-pheatmap

• r-plotly

• r-rcolorbrewer

• r-reshape2

• r-scales

• r-stringr

• r-tidyverse

• r-yaml

• ruffus

• samtools

• seaborn

• seqtk

• sortedcontainers

• subread

• trimmomatic

• trnascan-se

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install trnanalysis

and update with:

conda update trnanalysis

or use the docker container:

docker pull quay.io/biocontainers/trnanalysis:<tag>

(see trnanalysis/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/trnanalysis/README.html)