- recipe troika-tb
A pipeline implementing TB-Profiler for batch detection and reporting of anti-microbial resistance in TB for public health and clinical use.
- Homepage:
- License:
GPL-3.0
- Recipe:
- package troika-tb¶
- versions:
0.0.5-0- depends amply:
- depends appdirs:
- depends biopython:
>=1.70- depends chardet:
- depends configargparse:
- depends docutils:
- depends jinja2:
- depends markupsafe:
- depends nbformat:
- depends numpy:
- depends packaging:
- depends pandas:
>=1.1.4- depends pluggy:
>=0.13.1- depends psutil:
- depends pyparsing:
>=2.4.7- depends pytest:
- depends python:
>=3.7- depends pyyaml:
- depends requests:
- depends setuptools-scm:
- depends sh:
- depends six:
- depends snakemake:
>=5.9.1- depends svgwrite:
- depends toml:
- depends urllib3:
- depends xlsxwriter:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install troika-tb and update with:: mamba update troika-tb
To create a new environment, run:
mamba create --name myenvname troika-tb
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/troika-tb:<tag> (see `troika-tb/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/troika-tb/README.html)
