recipe trumicount

For NGS experiments using unique molecular identifiers (UMIs), molecules that are lost entirely during sequencing cause under- estimation of the molecule count, and amplification artifacts like PCR chimeras cause over-estimation. TRUmiCount corrects UMI data for both types of errors, thus improving the accuracy of measured molecule counts considerably.

Homepage:https://cibiv.github.io/trumicount/
Developer docs:https://github.com/Cibiv/trumicount
License:AGPL / AGPL-3.0
Recipe:/trumicount/meta.yaml
package trumicount

(downloads) docker_trumicount

Versions:

0.9.13-0, 0.9.12-0, 0.9.11.1-0, 0.9.11-1, 0.9.10-1, 0.9.9.3-1, 0.9.9.3-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install trumicount

and update with:

conda update trumicount

or use the docker container:

docker pull quay.io/biocontainers/trumicount:<tag>

(see trumicount/tags for valid values for <tag>)