trumicount

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For NGS experiments using unique molecular identifiers (UMIs), molecules that are lost entirely during sequencing cause under- estimation of the molecule count, and amplification artifacts like PCR chimeras cause over-estimation. TRUmiCount corrects UMI data for both types of errors, thus improving the accuracy of measured molecule counts considerably.

Home https://cibiv.github.io/trumicount/
Versions 0.9.11.1, 0.9.11, 0.9.10, 0.9.9.3
License AGPL-3.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/trumicount
Development https://github.com/Cibiv/trumicount

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install trumicount

and update with:

conda update trumicount

docker

A Docker container is available at https://quay.io/repository/biocontainers/trumicount.