recipe trumicount

For NGS experiments using unique molecular identifiers (UMIs), molecules that are lost entirely during sequencing cause under- estimation of the molecule count, and amplification artifacts like PCR chimeras cause over-estimation. TRUmiCount corrects UMI data for both types of errors, thus improving the accuracy of measured molecule counts considerably.

Homepage

https://cibiv.github.io/trumicount/

Developer docs

https://github.com/Cibiv/trumicount

License

AGPL / AGPL-3.0

Recipe

/trumicount/meta.yaml

package trumicount

(downloads) docker_trumicount

Versions

0.9.13-0, 0.9.12-0, 0.9.11.1-0, 0.9.11-1, 0.9.10-1, 0.9.9.3-1, 0.9.9.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install trumicount

and update with:

conda update trumicount

or use the docker container:

docker pull quay.io/biocontainers/trumicount:<tag>

(see trumicount/tags for valid values for <tag>)