recipe truvari

Structural variant comparison tool for VCFs

Homepage:

https://github.com/ACEnglish/truvari

License:

MIT

Recipe:

/truvari/meta.yaml

package truvari

Versions:

3.5.0-0,  3.4.0-0,  3.3.0-0,  3.2.0-0,  0.1.2018.08.10-2,  0.1.2018.08.10-1,  0.1.2018.08.10-0

Depends:

• bwapy >=0.1.4

• intervaltree >=3.0.2

• joblib >=1.0.1

• numpy >=1.21.2

• pandas >=1.3.3

• progressbar2 >=3.41.0

• pysam >=0.15.2

• pytabix >=0.1

• python >=3.6

• python-edlib >=1.3.8.post2

• python-levenshtein 0.12.2

• rich 12.5.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install truvari

and update with:

conda update truvari

or use the docker container:

docker pull quay.io/biocontainers/truvari:<tag>

(see truvari/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/truvari/README.html)