recipe tsebra

TSEBRA is a combiner tool that selects transcripts from gene predictions based on the support by extrisic evidence in form of introns and start/stop codons.

Homepage:

https://github.com/Gaius-Augustus/TSEBRA

License:

Other / Artistic-2.0

Recipe:

/tsebra/meta.yaml

package tsebra

versions:

1.1.2.5-0,  1.1.2.4-0,  1.1.2.3-0,  1.1.2.2-0,  1.1.2.1-0,  1.1.2-0,  1.1.1-0

depends numpy:

depends python:

>=3.5.2

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tsebra

and update with::

   mamba update tsebra

To create a new environment, run:

mamba create --name myenvname tsebra

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tsebra:<tag>

(see `tsebra/tags`_ for valid values for ``<tag>``)

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