recipe tsumugi

TSUMUGI: Phenotype-driven gene network identifier

Homepage:

https://github.com/akikuno/TSUMUGI-dev

Documentation:

https://github.com/akikuno/TSUMUGI-dev/blob/0.5.0/README.md

License:

MIT

Recipe:

/tsumugi/meta.yaml

package tsumugi

(downloads) docker_tsumugi

versions:

0.5.0-0

depends networkx:

>=3.3

depends numpy:

>=1.21.0

depends python:

>=3.10

depends tqdm:

>=4.64.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tsumugi

and update with::

   mamba update tsumugi

To create a new environment, run:

mamba create --name myenvname tsumugi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tsumugi:<tag>

(see `tsumugi/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tsumugi/README.html)