recipe twobitreader

A fast python package for reading .2bit files (used by the UCSC genome browser)

Homepage:

https://github.com/benjschiller/twobitreader

License:

Artistic License

Recipe:

/twobitreader/meta.yaml

package twobitreader

(downloads) docker_twobitreader

versions:

3.1.7-1,  3.1.7-0,  3.1.6-1,  3.1.6-0,  3.1.4-1,  3.1.4-0

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install twobitreader

and update with::

   mamba update twobitreader

To create a new environment, run:

mamba create --name myenvname twobitreader

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/twobitreader:<tag>

(see `twobitreader/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/twobitreader/README.html)