recipe tyto

Tyto (Take Your Terms from Ontologies) provides a handy interface for ontologies for use in your Python application.

Homepage:

https://github.com/SynBioDex/tyto

License:

Apache-2.0

Recipe:

/tyto/meta.yaml

package tyto

versions:

1.4-0,  1.0b3-0

depends pyparsing:

<3

depends python:

>=3.6

depends rdflib:

>=5.0

depends requests:

depends sparqlwrapper:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tyto

and update with::

   mamba update tyto

To create a new environment, run:

mamba create --name myenvname tyto

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tyto:<tag>

(see `tyto/tags`_ for valid values for ``<tag>``)

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