ucsc-bamtopsl

downloads

Convert a bam file to a psl and optionally also a fasta file that contains the reads.

Home http://hgdownload.cse.ucsc.edu/admin/exe/
Versions 366, 357
License varies; see http://genome.ucsc.edu/license
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/ucsc-bamtopsl

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ucsc-bamtopsl

and update with:

conda update ucsc-bamtopsl

docker

A Docker container is available at https://quay.io/repository/biocontainers/ucsc-bamtopsl.