recipe ucsc-fatofastq

Convert fa to fastq format, just faking quality values.



varies; see



package ucsc-fatofastq

(downloads) docker_ucsc-fatofastq



depends libgcc-ng:


depends libpng:


depends libuuid:


depends libzlib:


depends mysql-connector-c:


depends openssl:


depends zlib:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ucsc-fatofastq

and update with::

   mamba update ucsc-fatofastq

To create a new environment, run:

mamba create --name myenvname ucsc-fatofastq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `ucsc-fatofastq/tags`_ for valid values for ``<tag>``)

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