recipe ucsc-genepredtobed

Convert from genePred to bed format. Does not yet handle genePredExt

Homepage:

http://hgdownload.cse.ucsc.edu/admin/exe/

License:

varies; see http://genome.ucsc.edu/license

Recipe:

/ucsc-genepredtobed/meta.yaml

package ucsc-genepredtobed

Versions:

447-0,  377-5,  377-4,  377-3,  377-2,  377-1,  366-1,  366-0,  357-1, 

447-0,  377-5,  377-4,  377-3,  377-2,  377-1,  366-1,  366-0,  357-1,  357-0,  332-0,  324-0

Depends:

• libgcc-ng >=12

• libpng >=1.6.39,<1.7.0a0

• libstdcxx-ng >=12

• libuuid >=2.38.1,<3.0a0

• libzlib >=1.2.13,<1.3.0a0

• mysql-connector-c >=6.1.11,<6.1.12.0a0

• openssl >=1.1.1t,<1.1.2a

Required By:

• genomepy

• makehub

• squire

• comparative-annotation-toolkit

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ucsc-genepredtobed

and update with:

conda update ucsc-genepredtobed

or use the docker container:

docker pull quay.io/biocontainers/ucsc-genepredtobed:<tag>

(see ucsc-genepredtobed/tags for valid values for <tag>)

Download stats

Link to this page

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