recipe ucsc-getrna

Get mrna for GenBank or RefSeq sequences found in a database

Homepage

http://hgdownload.cse.ucsc.edu/admin/exe/

License

varies; see http://genome.ucsc.edu/license

Recipe

/ucsc-getrna/meta.yaml

package ucsc-getrna

(downloads) docker_ucsc-getrna

Versions

377-0, 366-0, 357-2, 357-1, 357-0, 332-0

Depends libgcc-ng

>=7.3.0

Depends libpng

>=1.6.35,<1.7.0a0

Depends libuuid

>=2.32.1,<3.0a0

Depends mysql-connector-c

>=6.1.11,<6.1.12.0a0

Depends openssl

>=1.0.2p,<1.0.3a

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ucsc-getrna

and update with:

conda update ucsc-getrna

or use the docker container:

docker pull quay.io/biocontainers/ucsc-getrna:<tag>

(see ucsc-getrna/tags for valid values for <tag>)