recipe ucsc-transmappsltogenepred

convert PSL alignments of mRNAs to gene annotations.

Homepage

http://hgdownload.cse.ucsc.edu/admin/exe/

License

varies; see http://genome.ucsc.edu/license

Recipe

/ucsc-transmappsltogenepred/meta.yaml

package ucsc-transmappsltogenepred

(downloads) docker_ucsc-transmappsltogenepred

Versions

377-0, 366-0, 357-2, 357-1, 357-0

Depends libgcc-ng

>=7.3.0

Depends libpng

>=1.6.35,<1.7.0a0

Depends libuuid

>=2.32.1,<3.0a0

Depends mysql-connector-c

Depends openssl

>=1.0.2p,<1.0.3a

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ucsc-transmappsltogenepred

and update with:

conda update ucsc-transmappsltogenepred

or use the docker container:

docker pull quay.io/biocontainers/ucsc-transmappsltogenepred:<tag>

(see ucsc-transmappsltogenepred/tags for valid values for <tag>)