recipe ucsc-twobittofa

Convert all or part of .2bit file to fasta

Homepage

http://hgdownload.cse.ucsc.edu/admin/exe/

License

varies; see http://genome.ucsc.edu/license

Recipe

/ucsc-twobittofa/meta.yaml

package ucsc-twobittofa

(downloads) docker_ucsc-twobittofa

Versions

377-1, 377-0, 366-0, 357-3, 357-2, 357-1, 357-0, 332-0, 324-0

Depends libgcc-ng

>=7.3.0

Depends libpng

>=1.6.35,<1.7.0a0

Depends libuuid

>=2.32.1,<3.0a0

Depends mysql-connector-c

>=6.1.11,<6.1.12.0a0

Depends openssl

>=1.1.1a,<1.1.2a

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ucsc-twobittofa

and update with:

conda update ucsc-twobittofa

or use the docker container:

docker pull quay.io/biocontainers/ucsc-twobittofa:<tag>

(see ucsc-twobittofa/tags for valid values for <tag>)