recipe ultra_bioinformatics

Splice aligner of long transcriptomic reads to genome.

Homepage:

https://github.com/ksahlin/uLTRA

License:

GPL3 / GNU GPLV3

Recipe:

/ultra_bioinformatics/meta.yaml

package ultra_bioinformatics

versions:

0.1-1,  0.1-0,  0.0.4.2-0,  0.0.4.1-0,  0.0.4-1,  0.0.4-0,  0.0.3.3-1,  0.0.3.3-0

depends dill:

depends gffutils:

depends intervaltree:

depends minimap2:

depends mummer:

depends namfinder:

depends parasail-python:

depends pysam:

depends python:

depends python-edlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ultra_bioinformatics

and update with::

   mamba update ultra_bioinformatics

To create a new environment, run:

mamba create --name myenvname ultra_bioinformatics

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ultra_bioinformatics:<tag>

(see `ultra_bioinformatics/tags`_ for valid values for ``<tag>``)

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