recipe unicore

Universal and efficient core gene phylogeny with Foldseek and ProstT5

Homepage:

https://github.com/steineggerlab/unicore

License:

GPL3 / GNU-3.0-or-later

Recipe:

/unicore/meta.yaml

package unicore

versions:

1.0.0c-0

depends fasttree:

depends foldmason:

depends foldseek:

>=9.427df8a

depends iqtree:

depends mafft:

depends openssl:

>=3.4.0,<4.0a0

depends protobuf:

depends pytorch:

depends raxml:

depends sentencepiece:

depends transformers:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install unicore

and update with::

   mamba update unicore

To create a new environment, run:

mamba create --name myenvname unicore

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/unicore:<tag>

(see `unicore/tags`_ for valid values for ``<tag>``)

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