recipe unifrac

Fast phylogenetic diversity calculations

Homepage:

https://github.com/biocore/unifrac

License:

BSD / BSD-3-Clause

Recipe:

/unifrac/meta.yaml

UniFrac is a commonly phylogenetic diversity distance metric used in microbiome research. The metric relates two microbiome samples together within the context of an evolutionary history, and produces a distance that corresponds to how similar two samples by the amount of overlapping branch length.

package unifrac

Versions:

1.3-0,  1.2-0,  1.1.1-1,  1.1.1-0,  1.1.0-0,  1.0.0-1,  1.0.0-0,  0.20.3-0,  0.20.2-1, 

1.3-0,  1.2-0,  1.1.1-1,  1.1.1-0,  1.1.0-0,  1.0.0-1,  1.0.0-0,  0.20.3-0,  0.20.2-1,  0.20.2-0,  0.20.1-0,  0.20.0-1,  0.20.0-0,  0.10.0-1,  0.10.0-0,  0.9.3-1,  0.9.3-0

Depends:

• biom-format

• h5py <3.0.0|>3.3.0

• iow

• libgcc-ng >=12

• numpy >=1.24.3,<2.0a0

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• scikit-bio >=0.5.8

• scipy >=1.9.0

• unifrac-binaries >=1.3

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install unifrac

and update with:

conda update unifrac

or use the docker container:

docker pull quay.io/biocontainers/unifrac:<tag>

(see unifrac/tags for valid values for <tag>)

Download stats

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