- recipe unifrac
Fast phylogenetic diversity calculations
- Homepage:
- License:
BSD / BSD-3-Clause
- Recipe:
UniFrac is a commonly phylogenetic diversity distance metric used in microbiome research. The metric relates two microbiome samples together within the context of an evolutionary history, and produces a distance that corresponds to how similar two samples by the amount of overlapping branch length.
- package unifrac¶
-
- Versions:
1.3-0
,1.2-0
,1.1.1-1
,1.1.1-0
,1.1.0-0
,1.0.0-1
,1.0.0-0
,0.20.3-0
,0.20.2-1
,1.3-0
,1.2-0
,1.1.1-1
,1.1.1-0
,1.1.0-0
,1.0.0-1
,1.0.0-0
,0.20.3-0
,0.20.2-1
,0.20.2-0
,0.20.1-0
,0.20.0-1
,0.20.0-0
,0.10.0-1
,0.10.0-0
,0.9.3-1
,0.9.3-0
- Depends:
h5py
<3.0.0|>3.3.0
libgcc-ng
>=12
numpy
>=1.24.3,<2.0a0
python
>=3.10,<3.11.0a0
python_abi
3.10.* *_cp310
scikit-bio
>=0.5.8
scipy
>=1.9.0
unifrac-binaries
>=1.3
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install unifrac
and update with:
conda update unifrac
or use the docker container:
docker pull quay.io/biocontainers/unifrac:<tag>
(see unifrac/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/unifrac/README.html)