recipe upd

Simple software to call UPD regions from germline exome/wgs trios.

Homepage:

https://github.com/bjhall/upd

License:

MIT / MIT

Recipe:

/upd/meta.yaml

package upd

versions:

0.1.1-0

depends click:

depends coloredlogs:

depends python:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install upd

and update with::

   mamba update upd

To create a new environment, run:

mamba create --name myenvname upd

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/upd:<tag>

(see `upd/tags`_ for valid values for ``<tag>``)

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