recipe upimapi

UniProt Id Mapping through API

Homepage:

https://github.com/iquasere/UPIMAPI

Documentation:

https://github.com/iquasere/UPIMAPI/blob/master/README.md

License:

BSD / BSD-3-Clause

Recipe:

/upimapi/meta.yaml

UPIMAPI takes as input either a list of UniProt IDs or a blast file from annotation using UniProt database as reference and uses UniProt's API to retrieve information relative to those IDs. It is essentially a command line implementation of UniProt's ID mapping web service available at https://www.uniprot.org/uploadlists/, allowing for retrieval of information from thousands of IDs in one go, while still relying on the web service.

package upimapi

(downloads) docker_upimapi

versions:
1.13.1-0,  1.13.0-0,  1.12.3-0,  1.12.2-0,  1.12.1-0,  1.12.0-0,  1.11.2-0,  1.11.1-0,  1.11.0-0, 

1.13.1-0,  1.13.0-0,  1.12.3-0,  1.12.2-0,  1.12.1-0,  1.12.0-0,  1.11.2-0,  1.11.1-0,  1.11.0-0,  1.10.0-0,  1.9.0-0,  1.8.14-0,  1.8.13-0,  1.8.12-0,  1.8.11-0,  1.8.10-0,  1.8.9-0,  1.8.8-0,  1.8.7-0,  1.8.6-0,  1.8.5-0,  1.8.4-0,  1.8.3-0,  1.8.2-0,  1.8.1-0,  1.7.5-0,  1.7.4-0,  1.7.3-0,  1.7.2-0,  1.7.1-0,  1.7.0-0,  1.6.4-0,  1.6.3-0,  1.6.2-0,  1.6.1-0,  1.6.0-0,  1.5.2-0,  1.5.1-0,  1.5.0-0,  1.4.0-0,  1.3.0-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.4-0,  1.1.3-1,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.4-0,  1.0.3-0,  1.0.2-0

depends biopython:

depends diamond:

depends pandas:

depends psutil:

depends pyyaml:

depends requests:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install upimapi

and update with::

   mamba update upimapi

To create a new environment, run:

mamba create --name myenvname upimapi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/upimapi:<tag>

(see `upimapi/tags`_ for valid values for ``<tag>``)

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Render an install-with-bioconda badge with the following MarkDown:

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