recipe upimapi

UniProt Id Mapping through API

Homepage

https://github.com/iquasere/UPIMAPI

Documentation

https://github.com/iquasere/UPIMAPI/blob/master/README.md

License

BSD / BSD-3-Clause

Recipe

/upimapi/meta.yaml

UPIMAPI takes as input either a list of UniProt IDs or a blast file from annotation using UniProt database as reference and uses UniProt's API to retrieve information relative to those IDs. It is essentially a command line implementation of UniProt's ID mapping web service available at https://www.uniprot.org/uploadlists/, allowing for retrieval of information from thousands of IDs in one go, while still relying on the web service.

package upimapi

(downloads) docker_upimapi

Versions
1.2.1-01.2.0-01.1.4-01.1.3-11.1.3-01.1.2-01.1.1-01.1.0-01.0.4-0

1.2.1-01.2.0-01.1.4-01.1.3-11.1.3-01.1.2-01.1.1-01.1.0-01.0.4-01.0.3-01.0.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install upimapi

and update with:

conda update upimapi

or use the docker container:

docker pull quay.io/biocontainers/upimapi:<tag>

(see upimapi/tags for valid values for <tag>)