recipe uscdc-datasets-sars-cov-2

Benchmark datasets for WGS analysis of SARS-CoV-2

Homepage

https://github.com/CDCgov/datasets-sars-cov-2

License

Apache-2.0

Recipe

/uscdc-datasets-sars-cov-2/meta.yaml

package uscdc-datasets-sars-cov-2

Versions

0.6.3-0,  0.6.2-0,  0.5.3-0,  0.4-0,  0.3-0

Depends

• coreutils

• entrez-direct

• make

• perl

• sra-tools

• wget

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install uscdc-datasets-sars-cov-2

and update with:

conda update uscdc-datasets-sars-cov-2

or use the docker container:

docker pull quay.io/biocontainers/uscdc-datasets-sars-cov-2:<tag>

(see uscdc-datasets-sars-cov-2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/uscdc-datasets-sars-cov-2/README.html)