recipe uvaia

Reference-based alignment and sequence database search

Homepage:

https://github.com/quadram-institute-bioscience/uvaia

License:

GPLv3

Recipe:

/uvaia/meta.yaml

Links:

biotools: uvaia

package uvaia

versions:

2.0.1-2,  2.0.1-1,  2.0.1-0,  1.0.0-2,  1.0.0-1,  1.0.0-0

depends __glibc:

>=2.17,<3.0.a0

depends _openmp_mutex:

>=4.5

depends bzip2:

>=1.0.8,<2.0a0

depends libgcc-ng:

>=12

depends libgomp:

depends libzlib:

>=1.2.13,<1.3.0a0

depends sysroot_linux-64:

2.17.*

depends xz:

>=5.2.6,<6.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install uvaia

and update with::

   mamba update uvaia

To create a new environment, run:

mamba create --name myenvname uvaia

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/uvaia:<tag>

(see `uvaia/tags`_ for valid values for ``<tag>``)

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