recipe valet

Pipeline for detecting mis-assemblies in metagenomic assemblies

Homepage:

https://github.com/marbl/VALET

License:

MIT

Recipe:

/valet/meta.yaml

package valet

versions:

1.0-5,  1.0-4,  1.0-3,  1.0-2,  1.0-1,  1.0-0

depends bedtools:

depends bowtie2:

depends numpy:

depends perl:

depends python:

<3

depends r-base:

depends samtools:

depends scipy:

depends tbb:

2020.2.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install valet

and update with::

   mamba update valet

To create a new environment, run:

mamba create --name myenvname valet

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/valet:<tag>

(see `valet/tags`_ for valid values for ``<tag>``)

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Link to this page

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