recipe valet

Pipeline for detecting mis-assemblies in metagenomic assemblies

Homepage

https://github.com/marbl/VALET

License

MIT

Recipe

/valet/meta.yaml

package valet

(downloads) docker_valet

Versions

1.0-1, 1.0-0

Depends bedtools

Depends bowtie2

Depends numpy

Depends perl

Depends python

>=2.7,<2.8.0a0

Depends r-base

Depends samtools

Depends scipy

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install valet

and update with:

conda update valet

or use the docker container:

docker pull quay.io/biocontainers/valet:<tag>

(see valet/tags for valid values for <tag>)