recipe variabel

Variabel is a novel approach and method for intrahost variant detection on ONT data, which outperforms existing ONT variant callers.

Homepage:

https://gitlab.com/treangenlab/variabel

License:

MIT

Recipe:

/variabel/meta.yaml

package variabel

Versions:

1.0.0-0

Depends:

• biopython

• lofreq

• python >=3.7

• pyvcf

• scipy

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install variabel

and update with:

conda update variabel

or use the docker container:

docker pull quay.io/biocontainers/variabel:<tag>

(see variabel/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/variabel/README.html)