recipe variant_tools

Integrated annotation and analysis of next gen sequencing data

Homepage:

https://github.com/vatlab/varianttools

License:

GNU General Public License (GPL)

Recipe:

/variant_tools/meta.yaml

package variant_tools

versions:

3.1.3-2,  3.1.3-1,  3.1.3-0,  3.1.2-0,  3.1.1-0,  3.1.0-0,  3.0.9-0,  3.0.8-0

depends blosc:

>=1.20.0,<2.0a0

depends boost-cpp:

>=1.70.0,<1.70.1.0a0

depends gsl:

>=2.6,<2.7.0a0

depends hdf5:

>=1.10.5,<1.10.6.0a0

depends libgcc-ng:

>=7.5.0

depends libstdcxx-ng:

>=7.5.0

depends numpy:

depends pycurl:

depends pytables:

depends python:

>=3.6,<3.7.0a0

depends python_abi:

3.6.* *_cp36m

depends pyzmq:

depends scipy:

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install variant_tools

and update with::

   mamba update variant_tools

To create a new environment, run:

mamba create --name myenvname variant_tools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/variant_tools:<tag>

(see `variant_tools/tags`_ for valid values for ``<tag>``)

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/variant_tools/README.html)