recipe variantbreak

Structural variant analyzer for data visualization on VariantMap



GPL3 / GNU General Public v3 (GPLv3)



package variantbreak

(downloads) docker_variantbreak



depends bedtools:


depends fastcluster:


depends numpy:


depends pandas:


depends pybedtools:


depends pysam:


depends pytables:


depends python:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install variantbreak

and update with::

   mamba update variantbreak

To create a new environment, run:

mamba create --name myenvname variantbreak

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `variantbreak/tags`_ for valid values for ``<tag>``)

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