recipe varifier

varifier: variant call verification

Homepage

https://github.com/iqbal-lab-org/varifier

License

MIT / MIT

Recipe

/varifier/meta.yaml

package varifier

Versions

0.3.1-0,  0.2.0-0,  0.1.0-0

Depends

• biopython

• cluster_vcf_records >=0.13.2

• mappy >=2.17

• minimap2 >=2.17

• mummer4

• pandas

• pyfastaq >=3.14.0

• pymummer

• pysam

• python >=3.6

• seaborn

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install varifier

and update with:

conda update varifier

or use the docker container:

docker pull quay.io/biocontainers/varifier:<tag>

(see varifier/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/varifier/README.html)