recipe varvamp

Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses

Homepage:

https://github.com/jonas-fuchs/varVAMP

License:

GPL-3.0-or-later

Recipe:

/varvamp/meta.yaml

package varvamp

versions:

1.2.1-0,  1.2.0-0,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1-0,  1.0.1-0,  1.0-0,  0.9.5-0, 

1.2.1-0,  1.2.0-0,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1-0,  1.0.1-0,  1.0-0,  0.9.5-0,  0.9.4-0,  0.9.3-0,  0.9.2-1,  0.9.2-0,  0.9.1-0,  0.9-0,  0.8.3-0,  0.4-0

depends biopython:

>=1.79

depends blast:

>=2.13.0

depends matplotlib-base:

>=3.5.1

depends numpy:

>=1.23.3

depends pandas:

>=1.4.4

depends primer3-py:

>=1.1.0

depends python:

>=3.9

depends seqfold:

>=0.7.15

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install varvamp

and update with::

   mamba update varvamp

To create a new environment, run:

mamba create --name myenvname varvamp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/varvamp:<tag>

(see `varvamp/tags`_ for valid values for ``<tag>``)

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