recipe vcf-validator

EBI EVA - Validation tool for VCF file format compliance

Homepage:

https://github.com/EBIVariation/vcf-validator

License:

Apache-2.0

Recipe:

/vcf-validator/meta.yaml

package vcf-validator

versions:

0.10.0-1,  0.10.0-0,  0.9.7-0,  0.9.6-0

depends bzip2:

>=1.0.8,<2.0a0

depends c-ares:

>=1.32.3,<2.0a0

depends libboost:

>=1.82.0,<1.83.0a0

depends libcurl:

>=8.10.1,<9.0a0

depends libgcc:

>=12

depends libstdcxx:

>=12

depends libzlib:

>=1.3.1,<2.0a0

depends openssl:

>=3.3.2,<4.0a0

depends zstd:

>=1.5.6,<1.6.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vcf-validator

and update with::

   mamba update vcf-validator

To create a new environment, run:

mamba create --name myenvname vcf-validator

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vcf-validator:<tag>

(see `vcf-validator/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vcf-validator/README.html)