recipe vcf2parquet

Convert a vcf in parquet.

Homepage:

https://github.com/natir/vcf2parquet

License:

MIT / MIT

Recipe:

/vcf2parquet/meta.yaml

package vcf2parquet

versions:

0.5.0-1,  0.5.0-0,  0.4.1-0,  0.4.0-0,  0.3.1-2,  0.3.1-1,  0.3.1-0,  0.3.0-0,  0.2-0, 

0.5.0-1,  0.5.0-0,  0.4.1-0,  0.4.0-0,  0.3.1-2,  0.3.1-1,  0.3.1-0,  0.3.0-0,  0.2-0,  0.1-0

depends bzip2:

>=1.0.8,<2.0a0

depends libgcc:

>=13

depends liblzma:

>=5.6.3,<6.0a0

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vcf2parquet

and update with::

   mamba update vcf2parquet

To create a new environment, run:

mamba create --name myenvname vcf2parquet

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vcf2parquet:<tag>

(see `vcf2parquet/tags`_ for valid values for ``<tag>``)

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