recipe vcontact2

Viral Contig Automatic Clustering and Taxonomy

Homepage:

https://bitbucket.org/MAVERICLab/vcontact2

Documentation:

https://bitbucket.org/MAVERICLab/vcontact2/src/master/README.md

License:

GPL / GPL-3.0-only

Recipe:

/vcontact2/meta.yaml

package vcontact2

versions:

0.11.3-0,  0.11.2-0,  0.11.1-0,  0.11.0-0,  0.9.19-0,  0.9.18-0,  0.9.17-0,  0.9.16-0,  0.9.15-0, 

0.11.3-0,  0.11.2-0,  0.11.1-0,  0.11.0-0,  0.9.19-0,  0.9.18-0,  0.9.17-0,  0.9.16-0,  0.9.15-0,  0.9.12-0

depends biopython:

>=1.78

depends hdf5:

>=1.10.4

depends networkx:

>=2.2

depends numpy:

>=1.20.1

depends pandas:

>=1.0.5

depends psutil:

>=5.8.0

depends pyparsing:

>=2.4.6

depends pytables:

>=3.4.0

depends python:

>=3.7

depends scikit-learn:

>=0.24.1

depends scipy:

>=1.6.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vcontact2

and update with::

   mamba update vcontact2

To create a new environment, run:

mamba create --name myenvname vcontact2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vcontact2:<tag>

(see `vcontact2/tags`_ for valid values for ``<tag>``)

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