recipe velvet

Sequence Assembler for short reads

Homepage:

https://www.ebi.ac.uk/~zerbino/velvet/

License:

GPL

Recipe:

/velvet/meta.yaml

Links:

biotools: velvet

package velvet

Versions:

1.2.10-5,  1.2.10-4,  1.2.10-3,  1.2.10-2,  1.2.10-1,  1.2.10-0

Depends:

• libgcc-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• zlib >=1.2.11,<1.3.0a0

Required By:

• perl-velvetoptimiser

• metavelvet

• repdenovo

• stacks

• fusioncatcher

• brass

• shovill

• oases

• metavelvet-sl

• jaffa

• shovill-se

• datma

• metavelvet-sl-pipeline

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install velvet

and update with:

conda update velvet

or use the docker container:

docker pull quay.io/biocontainers/velvet:<tag>

(see velvet/tags for valid values for <tag>)

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Link to this page

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