recipe vispr

VISPR is a visualization framework and analysis workflow for CRISPR/Cas9 knockout screens. VISPR is designed to display results calculated by MAGeCK.

Homepage:

https://bitbucket.org/liulab/vispr

License:

MIT / MIT

Recipe:

/vispr/meta.yaml

package vispr

(downloads) docker_vispr

versions:
0.4.17-1,  0.4.17-0,  0.4.16-0,  0.4.15-0,  0.4.14-2,  0.4.14-1,  0.4.14-0,  0.4.13-0,  0.4.12-0, 

0.4.17-1,  0.4.17-0,  0.4.16-0,  0.4.15-0,  0.4.14-2,  0.4.14-1,  0.4.14-0,  0.4.13-0,  0.4.12-0,  0.4.11-0,  0.4.10-0,  0.4.9-0,  0.4.8-0,  0.4.7-0,  0.4.6-0

depends appdirs:

depends flask:

depends numpy:

1.10.*

depends pandas:

depends python:

>=3

depends pyyaml:

depends scikit-learn:

depends scipy:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vispr

and update with::

   mamba update vispr

To create a new environment, run:

mamba create --name myenvname vispr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vispr:<tag>

(see `vispr/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vispr/README.html)