recipe vpt-segmentation-packing

Packs cell boundaries for the Vizgen vzg2 file format

Homepage:

https://github.com/Vizgen/vpt-segmentation-packing

License:

Apache-2.0

Recipe:

/vpt-segmentation-packing/meta.yaml

package vpt-segmentation-packing

versions:

1.0.1-0

depends mapbox_earcut:

>=1.0.1

depends numpy:

>=1.24.3

depends pandas:

>=2.0.3

depends pyarrow:

>=8.0.0

depends python:

>=3.9,<3.11

depends shapely:

>=2.0.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vpt-segmentation-packing

and update with::

   mamba update vpt-segmentation-packing

To create a new environment, run:

mamba create --name myenvname vpt-segmentation-packing

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vpt-segmentation-packing:<tag>

(see `vpt-segmentation-packing/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vpt-segmentation-packing/README.html)