recipe vqsr_cnn

Variant quality score recalibration with Convolutional Neural Networks

Homepage

https://broadinstitute.org/

License

MIT

Recipe

/vqsr_cnn/meta.yaml

package vqsr_cnn

(downloads) docker_vqsr_cnn

Versions

0.0.194-0, 0.0.132-1, 0.0.132-0

Depends biopython

>=1.70

Depends gatktool

Depends keras

>=2.0

Depends matplotlib

>=2.1.2

Depends numpy

>=1.13.1

Depends pysam

>=0.13

Depends python

Depends pyvcf

>=0.6.8

Depends scikit-learn

>=0.19.1

Depends scipy

>=0.19.1

Depends tensorflow

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install vqsr_cnn

and update with:

conda update vqsr_cnn

or use the docker container:

docker pull quay.io/biocontainers/vqsr_cnn:<tag>

(see vqsr_cnn/tags for valid values for <tag>)