recipe vtools

Various tools operating over VCF files. Uses cyvcf2 and cython under the hood for speed

Homepage:

https://github.com/LUMC/vtools

License:

MIT / MIT

Recipe:

/vtools/meta.yaml

package vtools

versions:

1.1.0-6,  1.1.0-5,  1.1.0-4,  1.1.0-3,  1.1.0-2,  1.1.0-1,  1.1.0-0,  1.0.0-1,  1.0.0-0

depends click:

depends cyvcf2:

>=0.31.0,<0.32.0a0

depends libgcc-ng:

>=12

depends numpy:

>=1.22.4,<2.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vtools

and update with::

   mamba update vtools

To create a new environment, run:

mamba create --name myenvname vtools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vtools:<tag>

(see `vtools/tags`_ for valid values for ``<tag>``)

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