recipe vvv2_display

Creates png image file with all [vardict] variants proportions alongside genome/assembly with annotations from [vadr].

Homepage:

https://github.com/ANSES-Ploufragan/vvv2_display/

License:

GPL / GPL-3.0-only

Recipe:

/vvv2_display/meta.yaml

package vvv2_display

versions:

0.2.2-0,  0.2.1-0,  0.1.10-0

depends numpy:

>=1.23.3

depends pip:

depends pysam:

>=0.19.1

depends python:

>=3.9

depends r-cowplot:

>=1.1.1

depends r-ggplot2:

>=3.4.4

depends r-gridextra:

>=2.3

depends r-jsonlite:

>=1.8.8

depends r-stringr:

>=1.5.1

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vvv2_display

and update with::

   mamba update vvv2_display

To create a new environment, run:

mamba create --name myenvname vvv2_display

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vvv2_display:<tag>

(see `vvv2_display/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vvv2_display/README.html)