recipe watchdog-wms

Watchdog, a WMS for the automated and distributed analysis of large-scale experimental data. The software is implemented in Java and is thus platform-independent. Main feature include + straightforward processing of replicate data + support for distributed computer systems + remote storage support + customizable error detection + manual intervention into workflow execution + GUI for workflow construction using pre-defined modules + a helper script for creating new module definitions + no restriction to specific programming languages + provides a flexible plugin system for extending without modifying the original sources

Homepage:

https://www.bio.ifi.lmu.de/watchdog

License:

GNU General Public License, Version 3

Recipe:

/watchdog-wms/meta.yaml

package watchdog-wms

(downloads) docker_watchdog-wms

versions:
2.0.8-0,  2.0.7-1,  2.0.7-0,  2.0.6-1,  2.0.6-0,  2.0.5-0,  2.0.4-0,  2.0.3-0,  2.0.2-0, 

2.0.8-0,  2.0.7-1,  2.0.7-0,  2.0.6-1,  2.0.6-0,  2.0.5-0,  2.0.4-0,  2.0.3-0,  2.0.2-0,  2.0.1-1,  2.0.1-0,  2.0.0-0,  1.2.7-1,  1.2.6-1,  1.2.6-0,  1.2.5-1,  1.2.5-0,  1.2.4b-0,  1.2.3b-0

depends coreutils:

>=8

depends javafx-sdk:

>=11

depends openjdk:

>=11

depends wget:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install watchdog-wms

and update with::

   mamba update watchdog-wms

To create a new environment, run:

mamba create --name myenvname watchdog-wms

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/watchdog-wms:<tag>

(see `watchdog-wms/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/watchdog-wms/README.html)