recipe weeder

Motif (transcription factor binding sites) discovery in sequences from coregulated genes of a single species. This is a new Weeder release rewritten to be faster and optimized for large ChIP-Seq data.

Homepage

http://159.149.160.51/modtools/

License

GPL3

Recipe

/weeder/meta.yaml

Links

biotools: weeder, doi: 10.1002/0471250953.bi0211s47

package weeder

(downloads) docker_weeder

Versions

2.0-2, 2.0-1, 2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install weeder

and update with:

conda update weeder

or use the docker container:

docker pull quay.io/biocontainers/weeder:<tag>

(see weeder/tags for valid values for <tag>)

Notes

Includes a simple wrapper script to be able to run weeder from any directory. It passes arguments transparently to the weeder2 executable.