weeder

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Motif (transcription factor binding sites) discovery in sequences from coregulated genes of a single species. This is a new Weeder release rewritten to be faster and optimized for large ChIP-Seq data.

Home http://159.149.160.51/modtools/
Versions 2.0
License GPL3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/weeder

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install weeder

and update with:

conda update weeder

Notes

Includes a simple wrapper script to be able to run weeder from any directory. It passes arguments transparently to the weeder2 executable.

docker

A Docker container is available at https://quay.io/repository/biocontainers/weeder.