recipe weeder

Motif (transcription factor binding sites) discovery in sequences from coregulated genes of a single species. This is a new Weeder release rewritten to be faster and optimized for large ChIP-Seq data.

Homepage:

http://159.149.160.51/modtools/

License:

GPL3

Recipe:

/weeder/meta.yaml

Links:

biotools: weeder, doi: 10.1002/0471250953.bi0211s47

package weeder

Versions:

2.0-8,  2.0-7,  2.0-6,  2.0-5,  2.0-4,  2.0-3,  2.0-2,  2.0-1,  2.0-0

Depends:

• libgcc-ng >=12

• libstdcxx-ng >=12

• python

Required By:

• gimmemotifs

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install weeder

and update with:

conda update weeder

or use the docker container:

docker pull quay.io/biocontainers/weeder:<tag>

(see weeder/tags for valid values for <tag>)

Notes

Includes a simple wrapper script to be able to run weeder from any directory. It passes arguments transparently to the weeder2 executable.

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