recipe wg-blimp

wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis Pipeline)

Homepage

https://github.com/MarWoes/wg-blimp

License

GPL / AGPL-3.0

Recipe

/wg-blimp/meta.yaml

wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis Pipeline) can be utilised to analyse WGBS data. It performs alignment, qc, methylation calling, DMR calling and DMR annotation using a multitude of tools.

package wg-blimp

(downloads) docker_wg-blimp

Versions

0.9.5-10.9.5-00.9.4-00.9.3-00.9.2-00.9.1-10.9.1-00.9.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install wg-blimp

and update with:

conda update wg-blimp

or use the docker container:

docker pull quay.io/biocontainers/wg-blimp:<tag>

(see wg-blimp/tags for valid values for <tag>)