recipe wg-blimp

wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis Pipeline)



GPL / AGPL-3.0



wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis Pipeline) can be utilised to analyse WGBS data. It performs alignment, qc, methylation calling, DMR calling and DMR annotation using a multitude of tools.

package wg-blimp

(downloads) docker_wg-blimp


0.9.3-0, 0.9.2-0, 0.9.1-1, 0.9.1-0, 0.9.0-0

Depends bedtools

Depends bioconductor-bsseq

Depends bwa

Depends bwameth


Depends click

Depends fastqc

Depends git

Depends h5py

Depends methyldackel

Depends metilene

Depends mosdepth

Depends multiqc

Depends picard

Depends pysam

Depends python


Depends qualimap

Depends r-data.table

Depends r-dt

Depends r-ggplot2

Depends r-htmlwidgets

Depends r-httpuv

Depends r-shiny

Depends r-shinydashboard

Depends r-stringr

Depends r-upsetr

Depends ruamel.yaml

Depends samtools

Depends snakemake



With an activated Bioconda channel (see 2. Set up channels), install with:

conda install wg-blimp

and update with:

conda update wg-blimp

or use the docker container:

docker pull<tag>

(see wg-blimp/tags for valid values for <tag>)