recipe wgd

wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication

Homepage:

https://github.com/heche-psb/wgd

Documentation:

https://wgdv2.readthedocs.io/en/latest/

License:

GPL3 / GPL-3.0-or-later

Recipe:

/wgd/meta.yaml

Links:

biotools: wgd, doi: 10.1007/978-1-0716-2561-3_1, doi: 10.1093/bioinformatics/btae272

package wgd

(downloads) docker_wgd

versions:
2.0.38-0,  2.0.37-0,  2.0.35-0,  2.0.34-0,  2.0.33-0,  2.0.32-0,  2.0.31-0,  2.0.30-0,  2.0.29-0, 

2.0.38-0,  2.0.37-0,  2.0.35-0,  2.0.34-0,  2.0.33-0,  2.0.32-0,  2.0.31-0,  2.0.30-0,  2.0.29-0,  2.0.28-0,  2.0.27-0,  2.0.26-0,  2.0.25-0,  2.0.24-0,  2.0.23-0,  2.0.22-0,  2.0.21-0,  2.0.20-0,  2.0.19-0,  2.0.18-0,  2.0.16-0,  2.0.15-0,  2.0.12-0

depends diamond:

depends mafft:

depends mcl:

depends paml:

depends python:

>=3.6,<3.10

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install wgd

and update with::

   mamba update wgd

To create a new environment, run:

mamba create --name myenvname wgd

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/wgd:<tag>

(see `wgd/tags`_ for valid values for ``<tag>``)

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