recipe wgfast

The whole genome focused array SNP typing (WG-FAST) pipeline

Homepage

https://github.com/jasonsahl/wgfast

License

GPL / GPL v3

Recipe

/wgfast/meta.yaml

package wgfast

Versions

1.0.4-0,  1.0.3-2,  1.0.3-1,  1.0.3-0

Depends

• bbmap

• biopython

• bwa

• click

• dendropy

• ete3

• logbook

• mash

• nasp

• ncbitk

• pandas

• pathos

• picard

• python >=3

• qt

• raxml

• retrying

• samtools

• snakemake >=5

Required By

• mtsv

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install wgfast

and update with:

conda update wgfast

or use the docker container:

docker pull quay.io/biocontainers/wgfast:<tag>

(see wgfast/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/wgfast/README.html)