recipe wiggletools

The WiggleTools package allows genomewide data files to be manipulated as numerical functions, equipped with all the standard functional analysis operators (sum, product, product by a scalar, comparators), and derived statistics (mean, median, variance, stddev, t-test, Wilcoxon's rank sum test, etc).

Homepage:

https://github.com/Ensembl/WiggleTools

License:

Apache / Apache

Recipe:

/wiggletools/meta.yaml

package wiggletools

(downloads) docker_wiggletools

versions:
1.2.11-6,  1.2.11-5,  1.2.11-4,  1.2.11-3,  1.2.11-2,  1.2.11-1,  1.2.11-0,  1.2.10-1,  1.2.10-0, 

1.2.11-6,  1.2.11-5,  1.2.11-4,  1.2.11-3,  1.2.11-2,  1.2.11-1,  1.2.11-0,  1.2.10-1,  1.2.10-0,  1.2.8-2,  1.2.8-1,  1.2.8-0,  1.2.7-0,  1.2.6-0,  1.2.3-1,  1.2.3-0,  1.2.2-4,  1.2.2-3,  1.2.2-2,  1.2.2-1,  1.2.2-0,  1.2.1-0

depends gsl:

>=2.7,<2.8.0a0

depends htslib:

>=1.17,<1.21.0a0

depends libbigwig:

>=0.4.7,<0.5.0a0

depends libcblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install wiggletools

and update with::

   mamba update wiggletools

To create a new environment, run:

mamba create --name myenvname wiggletools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/wiggletools:<tag>

(see `wiggletools/tags`_ for valid values for ``<tag>``)

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Link to this page

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