recipe wisestork

Within-sample CNV calling



GPL3 / GNU General Public v3 or later (GPLv3+)



package wisestork

(downloads) docker_wisestork



depends biopython:

depends click:

depends matplotlib-base:

depends numpy:

depends progressbar2:

depends pyfaidx:

depends pysam:

depends python:


depends scipy:

depends statsmodels:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install wisestork

and update with::

   mamba update wisestork

To create a new environment, run:

mamba create --name myenvname wisestork

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `wisestork/tags`_ for valid values for ``<tag>``)

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