recipe wub

Tools and software library developed by the ONT Applications group

Homepage:

https://github.com/nanoporetech/wub

License:

MPL-2.0

Recipe:

/wub/meta.yaml

package wub

versions:

0.5.1-0,  0.4.0-4,  0.4.0-3,  0.4.0-2,  0.3.1-2,  0.3.0-2,  0.2.0-2,  0.2.0-1,  0.2.0-0, 

0.5.1-0,  0.4.0-4,  0.4.0-3,  0.4.0-2,  0.3.1-2,  0.3.0-2,  0.2.0-2,  0.2.0-1,  0.2.0-0,  0.1.0-1,  0.1.0-0

depends biopython:

depends editdistance:

depends htslib:

1.1.*

depends matplotlib-base:

depends numpy:

depends pandas:

>=0.20.2

depends pysam:

depends pytest:

depends python:

depends seaborn:

depends statsmodels:

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install wub

and update with::

   mamba update wub

To create a new environment, run:

mamba create --name myenvname wub

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/wub:<tag>

(see `wub/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/wub/README.html)