recipe xatlas

xAtlas is a fast and retrainable small variant caller that has been developed at the Baylor College of Medicine Human Genome Sequencing Center.

Homepage

https://github.com/jfarek/xatlas

License

BSD-3-Clause

Recipe

/xatlas/meta.yaml

Links

doi: 10.1101/295071

package xatlas

(downloads) docker_xatlas

Versions

0.2.1-1, 0.2.1-0, 0.1-2, 0.1-1, 0.1-0

Depends htslib

>=1.9,<1.10.0a0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends pthread-stubs

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install xatlas

and update with:

conda update xatlas

or use the docker container:

docker pull quay.io/biocontainers/xatlas:<tag>

(see xatlas/tags for valid values for <tag>)