recipe xatlas

xAtlas is a fast and retrainable small variant caller that has been developed at the Baylor College of Medicine Human Genome Sequencing Center.

Homepage:

https://github.com/jfarek/xatlas

License:

BSD-3-Clause

Recipe:

/xatlas/meta.yaml

Links:

doi: 10.1101/295071

package xatlas

(downloads) docker_xatlas

versions:
0.3-4,  0.3-3,  0.3-2,  0.3-1,  0.3-0,  0.2.1-5,  0.2.1-4,  0.2.1-3,  0.2.1-2, 

0.3-4,  0.3-3,  0.3-2,  0.3-1,  0.3-0,  0.2.1-5,  0.2.1-4,  0.2.1-3,  0.2.1-2,  0.2.1-1,  0.2.1-0,  0.1-2,  0.1-1,  0.1-0

depends htslib:

>=1.20,<1.22.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends pthread-stubs:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install xatlas

and update with::

   mamba update xatlas

To create a new environment, run:

mamba create --name myenvname xatlas

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/xatlas:<tag>

(see `xatlas/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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