recipe xpore

xpore is a python package for Nanopore data analysis of differential RNA modifications.

Homepage:

https://github.com/GoekeLab/xpore

Documentation:

https://xpore.readthedocs.io/en/latest/

Developer docs:

https://github.com/GoekeLab/xpore.git

License:

MIT / MIT

Recipe:

/xpore/meta.yaml

Links:

doi: 10.1101/2020.06.18.160010, biotools: xpore

package xpore

versions:

2.1-0,  2.0-0,  1.0-0,  0.5.6-0

depends h5py:

>=2.10.0

depends numpy:

>=1.18.0

depends pandas:

>=0.25.3

depends pyensembl:

>=1.8.5

depends python:

depends pyyaml:

depends scipy:

>=1.4.1

depends ujson:

>=4.0.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install xpore

and update with::

   mamba update xpore

To create a new environment, run:

mamba create --name myenvname xpore

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/xpore:<tag>

(see `xpore/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/xpore/README.html)